IL_6SPD_008
3D structure
- PDB id
- 6SPD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAC
- Length
- 17 nucleotides
- Bulged bases
- 6SPD|1|A|U|495
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPD_008 not in the Motif Atlas
- Homologous match to IL_5J7L_255
- Geometric discrepancy: 0.1014
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6SPD|1|A|G|472
6SPD|1|A|A|473
6SPD|1|A|A|474
6SPD|1|A|C|475
*
6SPD|1|A|G|487
6SPD|1|A|A|488
6SPD|1|A|G|489
6SPD|1|A|U|490
6SPD|1|A|G|491
6SPD|1|A|A|492
6SPD|1|A|A|493
6SPD|1|A|A|494
6SPD|1|A|U|495
6SPD|1|A|A|496
6SPD|1|A|G|497
6SPD|1|A|A|498
6SPD|1|A|C|500
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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