IL_6SPD_032

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUAAGUG*CAAC

Length

12 nucleotides

Bulged bases

6SPD|1|A|U|1009, 6SPD|1|A|A|1134

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|G|1007
6SPD|1|A|U|1008
6SPD|1|A|U|1009
6SPD|1|A|A|1010
6SPD|1|A|A|1011
6SPD|1|A|G|1012
6SPD|1|A|U|1013
6SPD|1|A|G|1014
*
6SPD|1|A|C|1130
6SPD|1|A|A|1134
6SPD|1|A|A|1135
6SPD|1|A|C|1136

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13