IL_6SPD_034

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUG*CGCG

Length

9 nucleotides

Bulged bases

6SPD|1|A|U|1023, 6SPD|1|A|C|1113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|C|1020
6SPD|1|A|G|1021
6SPD|1|A|A|1022
6SPD|1|A|U|1023
6SPD|1|A|G|1024
*
6SPD|1|A|C|1111
6SPD|1|A|G|1112
6SPD|1|A|C|1113
6SPD|1|A|G|1114

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

50S ribosomal protein L6

Chain M

50S ribosomal protein L16