IL_6SPD_036

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

6SPD|1|A|A|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|C|1033
6SPD|1|A|U|1034
6SPD|1|A|U|1035
6SPD|1|A|A|1036
6SPD|1|A|G|1037
6SPD|1|A|A|1038
6SPD|1|A|C|1039
6SPD|1|A|A|1040
6SPD|1|A|G|1041
6SPD|1|A|C|1042
*
6SPD|1|A|G|1097
6SPD|1|A|U|1098
6SPD|1|A|C|1099
6SPD|1|A|G|1100
6SPD|1|A|A|1101
6SPD|1|A|G|1102

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6