IL_6SPD_040

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6SPD|1|A|A|1192

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_040 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.3331

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6SPD|1|A|G|1189
6SPD|1|A|U|1190
6SPD|1|A|A|1191
6SPD|1|A|A|1192
6SPD|1|A|G|1193
*
6SPD|1|A|U|1227
6SPD|1|A|A|1228
6SPD|1|A|U|1229
6SPD|1|A|C|1230

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15