IL_6SPD_048

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6SPD|1|A|U|1407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_048 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1447

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6SPD|1|A|C|1404
6SPD|1|A|G|1405
6SPD|1|A|A|1406
6SPD|1|A|U|1407
6SPD|1|A|G|1408
*
6SPD|1|A|C|1567
6SPD|1|A|U|1568
6SPD|1|A|A|1569
6SPD|1|A|A|1570
6SPD|1|A|G|1571

Current chains

Chain A

23S ribosomal RNA

Nearby chains