IL_6SPD_067

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_067 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1154

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6SPD|1|A|U|1851
6SPD|1|A|U|1852
6SPD|1|A|A|1853
6SPD|1|A|G|1854
*
6SPD|1|A|C|1861
6SPD|1|A|G|1862
6SPD|1|A|A|1863
6SPD|1|A|A|1864
6SPD|1|A|G|1865

Current chains

Chain A

23S ribosomal RNA

Nearby chains