IL_6SPD_108

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GCUAGGGGG*CUUACCAAAC

Length

19 nucleotides

Bulged bases

6SPD|1|A|U|866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|G|864
6SPD|1|A|C|865
6SPD|1|A|U|866
6SPD|1|A|A|867
6SPD|1|A|G|868
6SPD|1|A|G|869
6SPD|1|A|G|870
6SPD|1|A|G|871
6SPD|1|A|G|872
*
6SPD|1|A|C|882
6SPD|1|A|U|883
6SPD|1|A|U|884
6SPD|1|A|A|885
6SPD|1|A|C|886
6SPD|1|A|C|887
6SPD|1|A|A|888
6SPD|1|A|A|889
6SPD|1|A|A|890
6SPD|1|A|C|891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25