IL_6SPD_109

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_109 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1128

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6SPD|1|A|G|1656
6SPD|1|A|G|1657
6SPD|1|A|A|1658
6SPD|1|A|A|1659
6SPD|1|A|C|1660
6SPD|1|A|U|1661
6SPD|1|A|A|1662
6SPD|1|A|G|1663
6SPD|1|A|G|1664
*
6SPD|1|A|C|1977
6SPD|1|A|U|1978
6SPD|1|A|G|1979
6SPD|1|A|U|1980
6SPD|1|A|C|1981

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14