IL_6SPD_111

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAG*CAUCCUUGAAAUACCACCC

Length

37 nucleotides

Bulged bases

6SPD|1|A|U|2098, 6SPD|1|A|U|2105, 6SPD|1|A|C|2151, 6SPD|1|A|A|2156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPD|1|A|G|2097
6SPD|1|A|U|2098
6SPD|1|A|G|2099
6SPD|1|A|U|2100
6SPD|1|A|A|2101
6SPD|1|A|G|2102
6SPD|1|A|G|2103
6SPD|1|A|A|2104
6SPD|1|A|U|2105
6SPD|1|A|A|2106
6SPD|1|A|G|2107
6SPD|1|A|G|2108
6SPD|1|A|U|2109
6SPD|1|A|G|2110
6SPD|1|A|G|2111
6SPD|1|A|G|2112
6SPD|1|A|A|2113
6SPD|1|A|G|2114
*
6SPD|1|A|C|2148
6SPD|1|A|A|2149
6SPD|1|A|U|2150
6SPD|1|A|C|2151
6SPD|1|A|C|2152
6SPD|1|A|U|2153
6SPD|1|A|U|2154
6SPD|1|A|G|2155
6SPD|1|A|A|2156
6SPD|1|A|A|2157
6SPD|1|A|A|2158
6SPD|1|A|U|2159
6SPD|1|A|A|2160
6SPD|1|A|C|2161
6SPD|1|A|C|2162
6SPD|1|A|A|2163
6SPD|1|A|C|2164
6SPD|1|A|C|2165
6SPD|1|A|C|2166

Current chains

Chain A

23S ribosomal RNA

Nearby chains