IL_6SPE_003
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCUAAC*GGG
- Length
- 9 nucleotides
- Bulged bases
- 6SPE|1|a|C|48, 6SPE|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPE_003 not in the Motif Atlas
- Homologous match to IL_5J7L_003
- Geometric discrepancy: 0.122
- The information below is about IL_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SPE|1|a|C|47
6SPE|1|a|C|48
6SPE|1|a|U|49
6SPE|1|a|A|50
6SPE|1|a|A|51
6SPE|1|a|C|52
*
6SPE|1|a|G|353
6SPE|1|a|G|354
6SPE|1|a|G|355
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
Coloring options: