IL_6SPE_017

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPE_017 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.162

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6SPE|1|a|U|403
6SPE|1|a|G|404
6SPE|1|a|A|405
6SPE|1|a|A|406
6SPE|1|a|G|407
6SPE|1|a|A|408
6SPE|1|a|A|409
6SPE|1|a|G|410
*
6SPE|1|a|U|421
6SPE|1|a|G|422
6SPE|1|a|U|423
6SPE|1|a|A|424
6SPE|1|a|A|425
6SPE|1|a|A|426
6SPE|1|a|G|427

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4