IL_6SPE_051
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPE_051 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.3215
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6SPE|1|a|C|1253
6SPE|1|a|C|1254
6SPE|1|a|A|1255
6SPE|1|a|A|1256
6SPE|1|a|G|1257
*
6SPE|1|a|U|1266
6SPE|1|a|G|1267
6SPE|1|a|G|1268
6SPE|1|a|A|1269
6SPE|1|a|G|1270
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
Coloring options: