IL_6SPE_063

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAGAGGG*CCUGGACU

Length

17 nucleotides

Bulged bases

6SPE|1|a|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPE|1|a|G|654
6SPE|1|a|G|655
6SPE|1|a|U|656
6SPE|1|a|A|657
6SPE|1|a|G|658
6SPE|1|a|A|659
6SPE|1|a|G|660
6SPE|1|a|G|661
6SPE|1|a|G|662
*
6SPE|1|a|C|732
6SPE|1|a|C|733
6SPE|1|a|U|734
6SPE|1|a|G|735
6SPE|1|a|G|736
6SPE|1|a|A|737
6SPE|1|a|C|738
6SPE|1|a|U|739

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21