IL_6SPE_064

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUGUGG*CACACGUG

Length

15 nucleotides

Bulged bases

6SPE|1|a|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPE|1|a|C|942
6SPE|1|a|A|943
6SPE|1|a|U|944
6SPE|1|a|G|945
6SPE|1|a|U|946
6SPE|1|a|G|947
6SPE|1|a|G|948
*
6SPE|1|a|C|1220
6SPE|1|a|A|1221
6SPE|1|a|C|1222
6SPE|1|a|A|1223
6SPE|1|a|C|1224
6SPE|1|a|G|1225
6SPE|1|a|U|1226
6SPE|1|a|G|1227

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19