IL_6SW9_010

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAGUUG*CAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|257
6SW9|1|2|U|258
6SW9|1|2|A|259
6SW9|1|2|G|260
6SW9|1|2|U|261
6SW9|1|2|U|262
6SW9|1|2|G|263
*
6SW9|1|2|C|281
6SW9|1|2|A|282
6SW9|1|2|A|283
6SW9|1|2|G|284
6SW9|1|2|C|285

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain R

30S ribosomal protein S17