IL_6SW9_019

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6SW9|1|2|A|498, 6SW9|1|2|U|500, 6SW9|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|481
6SW9|1|2|U|482
6SW9|1|2|G|483
6SW9|1|2|G|484
6SW9|1|2|C|485
6SW9|1|2|A|486
6SW9|1|2|G|487
*
6SW9|1|2|C|494
6SW9|1|2|G|495
6SW9|1|2|G|496
6SW9|1|2|U|497
6SW9|1|2|A|498
6SW9|1|2|A|499
6SW9|1|2|U|500
6SW9|1|2|A|501
6SW9|1|2|C|502

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

mRNA

Chain 6

Translation initiation factor 1A

Chain N

30S ribosomal protein S12

Chain Z

30S ribosomal protein S3