IL_6SW9_023

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAAUC*GGCUCG

Length

13 nucleotides

Bulged bases

6SW9|1|2|C|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|571
6SW9|1|2|G|572
6SW9|1|2|A|573
6SW9|1|2|A|574
6SW9|1|2|A|575
6SW9|1|2|U|576
6SW9|1|2|C|577
*
6SW9|1|2|G|595
6SW9|1|2|G|596
6SW9|1|2|C|597
6SW9|1|2|U|598
6SW9|1|2|C|599
6SW9|1|2|G|600

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain E

30S ribosomal protein S4e

Chain I

30S ribosomal protein S8

Chain R

30S ribosomal protein S17