IL_6SW9_044

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGAUGAAG*CGGAC

Length

13 nucleotides

Bulged bases

6SW9|1|2|U|974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|971
6SW9|1|2|G|972
6SW9|1|2|A|973
6SW9|1|2|U|974
6SW9|1|2|G|975
6SW9|1|2|A|976
6SW9|1|2|A|977
6SW9|1|2|G|978
*
6SW9|1|2|C|998
6SW9|1|2|G|999
6SW9|1|2|G|1000
6SW9|1|2|A|1001
6SW9|1|2|C|1002

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L7Ae

Chain P

30S ribosomal protein S14 type Z

Chain Y

30S ribosomal protein S27ae