IL_6SW9_062

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUUAG*(4AC)GAAGAUC

Length

14 nucleotides

Bulged bases

6SW9|1|2|U|253, 6SW9|1|2|A|289

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|251
6SW9|1|2|A|252
6SW9|1|2|U|253
6SW9|1|2|U|254
6SW9|1|2|A|255
6SW9|1|2|G|256
*
6SW9|1|2|4AC|286
6SW9|1|2|G|287
6SW9|1|2|A|288
6SW9|1|2|A|289
6SW9|1|2|G|290
6SW9|1|2|A|291
6SW9|1|2|U|292
6SW9|1|2|C|293

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17