IL_6SW9_063

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCAAUGCG*(4AC)GCGAC

Length

14 nucleotides

Bulged bases

6SW9|1|2|G|397

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|380
6SW9|1|2|C|381
6SW9|1|2|A|382
6SW9|1|2|A|383
6SW9|1|2|U|384
6SW9|1|2|G|385
6SW9|1|2|C|386
6SW9|1|2|G|387
*
6SW9|1|2|4AC|394
6SW9|1|2|G|395
6SW9|1|2|C|396
6SW9|1|2|G|397
6SW9|1|2|A|398
6SW9|1|2|C|399

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain V

30S ribosomal protein S24e