3D structure

PDB id
6SW9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUAG*(4AC)GUAGGGAAGC(4AC)GUUAAG
Length
22 nucleotides
Bulged bases
6SW9|1|2|U|842
QA status
Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SW9|1|2|C|793
6SW9|1|2|U|794
6SW9|1|2|A|795
6SW9|1|2|G|796
*
6SW9|1|2|4AC|828
6SW9|1|2|G|829
6SW9|1|2|U|830
6SW9|1|2|A|831
6SW9|1|2|G|832
6SW9|1|2|G|833
6SW9|1|2|G|834
6SW9|1|2|A|835
6SW9|1|2|A|836
6SW9|1|2|G|837
6SW9|1|2|C|838
6SW9|1|2|4AC|839
6SW9|1|2|G|840
6SW9|1|2|U|841
6SW9|1|2|U|842
6SW9|1|2|A|843
6SW9|1|2|A|844
6SW9|1|2|G|845

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 5
mRNA
Chain B
30S ribosomal protein S2
Chain C
Zn-ribbon RNA-binding protein involved in translation
Chain F
30S ribosomal protein S5
Chain I
30S ribosomal protein S8
Chain N
30S ribosomal protein S12
Chain Q
30S ribosomal protein S15
Chain W
30S ribosomal protein S27e

Coloring options:

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