IL_6SW9_076

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAGCGGGGCC*GGCUCCGUGAG

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|1390
6SW9|1|2|G|1391
6SW9|1|2|A|1392
6SW9|1|2|G|1393
6SW9|1|2|C|1394
6SW9|1|2|G|1395
6SW9|1|2|G|1396
6SW9|1|2|G|1397
6SW9|1|2|G|1398
6SW9|1|2|C|1399
6SW9|1|2|C|1400
*
6SW9|1|2|G|1443
6SW9|1|2|G|1444
6SW9|1|2|C|1445
6SW9|1|2|U|1446
6SW9|1|2|C|1447
6SW9|1|2|C|1448
6SW9|1|2|G|1449
6SW9|1|2|U|1450
6SW9|1|2|G|1451
6SW9|1|2|A|1452
6SW9|1|2|G|1453

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L41e

Chain 7

Translation initiation factor 2 subunit gamma

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12