IL_6SW9_082

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUGCCAGUC*GAGGCACUC

Length

19 nucleotides

Bulged bases

6SW9|1|2|U|1091

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|G|1089
6SW9|1|2|U|1090
6SW9|1|2|U|1091
6SW9|1|2|G|1092
6SW9|1|2|C|1093
6SW9|1|2|C|1094
6SW9|1|2|A|1095
6SW9|1|2|G|1096
6SW9|1|2|U|1097
6SW9|1|2|C|1098
*
6SW9|1|2|G|1115
6SW9|1|2|A|1116
6SW9|1|2|G|1117
6SW9|1|2|G|1118
6SW9|1|2|C|1119
6SW9|1|2|A|1120
6SW9|1|2|C|1121
6SW9|1|2|U|1122
6SW9|1|2|C|1123

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S9

Chain L

30S ribosomal protein S10