IL_6SW9_083

3D structure

PDB id

6SW9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCG(OMC)C(5HM)*G(UR3)A(6MZ)CAAG

Length

14 nucleotides

Bulged bases

6SW9|1|2|C|1374, 6SW9|1|2|A|1472

QA status

Modified nucleotides: OMC, 5HM, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SW9|1|2|C|1373
6SW9|1|2|C|1374
6SW9|1|2|G|1375
6SW9|1|2|OMC|1376
6SW9|1|2|C|1377
6SW9|1|2|5HM|1378
*
6SW9|1|2|G|1466
6SW9|1|2|UR3|1467
6SW9|1|2|A|1468
6SW9|1|2|6MZ|1469
6SW9|1|2|C|1470
6SW9|1|2|A|1471
6SW9|1|2|A|1472
6SW9|1|2|G|1473

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L41e

Chain 4

Transfer RNA; tRNA

Chain 5

mRNA