IL_6SWA_008
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCC*GAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_008 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.1398
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6SWA|1|q|U|122
6SWA|1|q|C|123
6SWA|1|q|C|124
*
6SWA|1|q|G|143
6SWA|1|q|A|144
6SWA|1|q|A|145
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L15
- Chain f
- 60S ribosomal protein L35
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
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