IL_6SWA_017
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.1415
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|G|409
6SWA|1|q|U|410
6SWA|1|q|G|411
6SWA|1|q|A|412
6SWA|1|q|A|413
6SWA|1|q|A|414
6SWA|1|q|C|415
*
6SWA|1|r|G|13
6SWA|1|r|U|14
6SWA|1|r|G|15
6SWA|1|r|G|16
6SWA|1|r|A|17
6SWA|1|r|U|18
6SWA|1|r|C|19
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
- Chain r
- 5.8S ribosomal RNA (157-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain O
- 60S ribosomal protein L17
- Chain c
- 60S ribosomal protein L32
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