IL_6SWA_023

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCG*CCGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_023 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2052

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6SWA|1|q|G|472
6SWA|1|q|G|473
6SWA|1|q|C|474
6SWA|1|q|G|475
*
6SWA|1|q|C|667
6SWA|1|q|C|668
6SWA|1|q|G|669
6SWA|1|q|C|670

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain p

60S ribosomal protein L28