IL_6SWA_032

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

6SWA|1|q|G|1271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_032 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.27

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6SWA|1|q|G|699
6SWA|1|q|C|700
*
6SWA|1|q|G|1270
6SWA|1|q|G|1271
6SWA|1|q|C|1272

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain d

60S ribosomal protein L35a