IL_6SWA_046

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6SWA|1|q|A|1479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_046 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.1107

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SWA|1|q|C|1449
6SWA|1|q|C|1450
*
6SWA|1|q|G|1478
6SWA|1|q|A|1479
6SWA|1|q|G|1480

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain P

60S ribosomal protein L18

Chain Y

60S ribosomal protein L27a

Chain Z

60S ribosomal protein L29