IL_6SWA_057

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCGCCCACG*CG

Length

12 nucleotides

Bulged bases

6SWA|1|q|C|1680, 6SWA|1|q|C|1699, 6SWA|1|q|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|C|1676
6SWA|1|q|U|1677
6SWA|1|q|C|1678
6SWA|1|q|G|1679
6SWA|1|q|C|1680
6SWA|1|q|C|1699
6SWA|1|q|C|1700
6SWA|1|q|A|1701
6SWA|1|q|C|1702
6SWA|1|q|G|1703
*
6SWA|1|q|C|1822
6SWA|1|q|G|1823

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain F

60S ribosomal protein L7

Chain P

60S ribosomal protein L18

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29