IL_6SWA_062
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_062 not in the Motif Atlas
- Geometric match to IL_5TBW_041
- Geometric discrepancy: 0.1781
- The information below is about IL_5TBW_041
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SWA|1|q|A|1728
6SWA|1|q|U|1729
6SWA|1|q|U|1730
6SWA|1|q|A|1731
*
6SWA|1|q|U|1763
6SWA|1|q|U|1764
6SWA|1|q|C|1765
6SWA|1|q|U|1766
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain I
- 60S ribosomal protein L10
- Chain s
- 5S ribosomal RNA; 5S rRNA
Coloring options: