IL_6SWA_063

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_063 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1521

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SWA|1|q|A|1731
6SWA|1|q|G|1732
6SWA|1|q|A|1733
*
6SWA|1|q|U|1761
6SWA|1|q|A|1762
6SWA|1|q|U|1763

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain s

5S ribosomal RNA; 5S rRNA