IL_6SWA_064

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCUU*AAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_064 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3428

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SWA|1|q|G|1735
6SWA|1|q|U|1736
6SWA|1|q|C|1737
6SWA|1|q|U|1738
6SWA|1|q|U|1739
*
6SWA|1|q|A|1757
6SWA|1|q|A|1758
6SWA|1|q|C|1759

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10