IL_6SWA_075
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6SWA|1|q|U|1928
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_075 not in the Motif Atlas
- Homologous match to IL_5TBW_053
- Geometric discrepancy: 0.1511
- The information below is about IL_5TBW_053
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6SWA|1|q|G|1927
6SWA|1|q|U|1928
6SWA|1|q|G|1929
*
6SWA|1|q|C|2016
6SWA|1|q|C|2017
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain I
- 60S ribosomal protein L10
- Chain Q
- 60S ribosomal protein L18a
- Chain k
- Ubiquitin-60S ribosomal protein L40
- Chain s
- 5S ribosomal RNA; 5S rRNA
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