IL_6SWA_080
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6SWA|1|q|A|2279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_080 not in the Motif Atlas
- Homologous match to IL_8C3A_062
- Geometric discrepancy: 0.5277
- The information below is about IL_8C3A_062
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6SWA|1|q|G|2278
6SWA|1|q|A|2279
6SWA|1|q|G|2280
*
6SWA|1|q|C|2313
6SWA|1|q|C|2314
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain c
- 60S ribosomal protein L32
- Chain p
- 60S ribosomal protein L28
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: