IL_6SWA_081
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6SWA|1|q|U|2284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_081 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1538
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6SWA|1|q|C|2281
6SWA|1|q|C|2282
6SWA|1|q|U|2283
6SWA|1|q|U|2284
6SWA|1|q|G|2285
6SWA|1|q|A|2286
6SWA|1|q|A|2287
6SWA|1|q|G|2288
*
6SWA|1|q|U|2308
6SWA|1|q|G|2309
6SWA|1|q|G|2310
6SWA|1|q|A|2311
6SWA|1|q|G|2312
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain W
- 60S ribosomal protein L26
- Chain c
- 60S ribosomal protein L32
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
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