IL_6SWA_094
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCC*GGG
- Length
- 7 nucleotides
- Bulged bases
- 6SWA|1|q|G|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_094 not in the Motif Atlas
- Geometric match to IL_406D_002
- Geometric discrepancy: 0.2637
- The information below is about IL_406D_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6SWA|1|q|C|2630
6SWA|1|q|G|2631
6SWA|1|q|C|2632
6SWA|1|q|C|2633
*
6SWA|1|q|G|2659
6SWA|1|q|G|2660
6SWA|1|q|G|2661
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain X
- 60S ribosomal protein L27
- Chain a
- 60S ribosomal protein L30
- Chain e
- 60S ribosomal protein L34
- Chain n
- 60S ribosomal protein L37a
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