IL_6SWA_114

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6SWA|1|q|A|3872, 6SWA|1|q|C|4522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_114 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1567

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SWA|1|q|G|3871
6SWA|1|q|A|3872
6SWA|1|q|A|3873
*
6SWA|1|q|U|4520
6SWA|1|q|A|4521
6SWA|1|q|C|4522
6SWA|1|q|C|4523

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L17