IL_6SWA_117

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6SWA|1|q|G|4145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_117 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1178

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6SWA|1|q|U|3898
6SWA|1|q|A|3899
6SWA|1|q|G|3900
*
6SWA|1|q|U|4143
6SWA|1|q|G|4144
6SWA|1|q|G|4145
6SWA|1|q|G|4146

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain M

60S ribosomal protein L15

Chain m

MCG115063, isoform CRA_a