IL_6SWA_119

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAG*CUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_119 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3946

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6SWA|1|q|U|3921
6SWA|1|q|G|3922
6SWA|1|q|A|3923
6SWA|1|q|G|3924
*
6SWA|1|q|C|4029
6SWA|1|q|U|4030
6SWA|1|q|G|4031
6SWA|1|q|A|4032

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain g

60S ribosomal protein L36