IL_6SWA_122
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6SWA|1|q|G|4054, 6SWA|1|q|G|4056, 6SWA|1|q|G|4057, 6SWA|1|q|C|4124, 6SWA|1|q|U|4125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_122 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2662
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|G|4052
6SWA|1|q|U|4053
6SWA|1|q|G|4054
6SWA|1|q|A|4055
6SWA|1|q|G|4056
6SWA|1|q|G|4057
6SWA|1|q|C|4058
*
6SWA|1|q|G|4123
6SWA|1|q|C|4124
6SWA|1|q|U|4125
6SWA|1|q|C|4126
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain V
- 60S ribosomal protein L23a
- Chain r
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: