IL_6SWA_124

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_124 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.0644

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SWA|1|q|G|4153
6SWA|1|q|A|4154
*
6SWA|1|q|U|4164
6SWA|1|q|A|4165
6SWA|1|q|C|4166

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain I

60S ribosomal protein L10

Chain R

60S ribosomal protein L21

Chain Z

60S ribosomal protein L29

Chain m

MCG115063, isoform CRA_a