IL_6SWA_128

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCUUG*UGAUCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|4362
6SWA|1|q|G|4363
6SWA|1|q|C|4364
6SWA|1|q|U|4365
6SWA|1|q|U|4366
6SWA|1|q|G|4367
*
6SWA|1|q|U|4401
6SWA|1|q|G|4402
6SWA|1|q|A|4403
6SWA|1|q|U|4404
6SWA|1|q|C|4405
6SWA|1|q|C|4406

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

60S ribosomal protein L10

Chain Z

60S ribosomal protein L29