IL_6SWA_169

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGUG*CG

Length

7 nucleotides

Bulged bases

6SWA|1|q|U|184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_169 not in the Motif Atlas

Geometric match to IL_8C3A_128

Geometric discrepancy: 0.1609

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SWA|1|q|U|181
6SWA|1|q|C|182
6SWA|1|q|G|183
6SWA|1|q|U|184
6SWA|1|q|G|185
*
6SWA|1|q|C|248
6SWA|1|q|G|249

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain K

60S ribosomal protein L13

Chain h

60S ribosomal protein L37

Chain r

5.8S ribosomal RNA; 5.8S rRNA