IL_6SWA_170

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGGAUUCAAC*GGCGCAUUUCC

Length

22 nucleotides

Bulged bases

6SWA|1|q|C|678, 6SWA|1|q|G|679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|456
6SWA|1|q|A|457
6SWA|1|q|G|458
6SWA|1|q|G|459
6SWA|1|q|A|460
6SWA|1|q|U|461
6SWA|1|q|U|462
6SWA|1|q|C|463
6SWA|1|q|A|464
6SWA|1|q|A|465
6SWA|1|q|C|466
*
6SWA|1|q|G|676
6SWA|1|q|G|677
6SWA|1|q|C|678
6SWA|1|q|G|679
6SWA|1|q|C|680
6SWA|1|q|A|681
6SWA|1|q|U|682
6SWA|1|q|U|683
6SWA|1|q|U|684
6SWA|1|q|C|685
6SWA|1|q|C|686

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain E

60S ribosomal protein L6

Chain p

60S ribosomal protein L28