IL_6SWA_171

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGGGUCCGGCC*GGCGACCGGCCGC

Length

26 nucleotides

Bulged bases

6SWA|1|q|C|479, 6SWA|1|q|C|660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|472
6SWA|1|q|G|473
6SWA|1|q|C|474
6SWA|1|q|G|475
6SWA|1|q|G|476
6SWA|1|q|G|477
6SWA|1|q|U|478
6SWA|1|q|C|479
6SWA|1|q|C|480
6SWA|1|q|G|481
6SWA|1|q|G|482
6SWA|1|q|C|483
6SWA|1|q|C|484
*
6SWA|1|q|G|658
6SWA|1|q|G|659
6SWA|1|q|C|660
6SWA|1|q|G|661
6SWA|1|q|A|662
6SWA|1|q|C|663
6SWA|1|q|C|664
6SWA|1|q|G|665
6SWA|1|q|G|666
6SWA|1|q|C|667
6SWA|1|q|C|668
6SWA|1|q|G|669
6SWA|1|q|C|670

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain p

60S ribosomal protein L28