IL_6SWA_172

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

6SWA|1|q|U|507, 6SWA|1|q|U|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_172 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2369

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6SWA|1|q|C|505
6SWA|1|q|U|506
6SWA|1|q|U|507
6SWA|1|q|U|508
6SWA|1|q|C|509
*
6SWA|1|q|G|640
6SWA|1|q|G|641
6SWA|1|q|G|642

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain K

60S ribosomal protein L13

Chain Y

60S ribosomal protein L27a