IL_6SWA_176

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GGUC

Length

7 nucleotides

Bulged bases

6SWA|1|q|G|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_176 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1529

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6SWA|1|q|G|1531
6SWA|1|q|G|1532
6SWA|1|q|C|1533
*
6SWA|1|q|G|1558
6SWA|1|q|G|1559
6SWA|1|q|U|1560
6SWA|1|q|C|1561

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain n

60S ribosomal protein L37a

Chain o

60S ribosomal protein L19