IL_6SWA_178

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAGA*UAUUCUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|1727
6SWA|1|q|A|1728
6SWA|1|q|U|1729
6SWA|1|q|U|1730
6SWA|1|q|A|1731
6SWA|1|q|G|1732
6SWA|1|q|A|1733
*
6SWA|1|q|U|1761
6SWA|1|q|A|1762
6SWA|1|q|U|1763
6SWA|1|q|U|1764
6SWA|1|q|C|1765
6SWA|1|q|U|1766
6SWA|1|q|C|1767

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain D

60S ribosomal protein L5

Chain I

60S ribosomal protein L10

Chain s

5S ribosomal RNA; 5S rRNA